Useful Snakemake Questions from StackOverflow

I’ve been spending alot of time using snakemake recently, and I absoutly love it. It makes processing a ton of files relativly easy, and does a ton of the self documenting itself. Paired with this is that it’s far more pliable than a bash script.

That being said, I feel like I revisit the same 20 stack overflow examples. So, here’s an ever updating list of examples I find useful

  1. How to mix Globbing and Wilcards

  2. How to use a nested YAML file Long but worth it